Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Tfap2a-203ENSMUST00000223869 2037 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Zcchc6-207ENSMUST00000225576 2499 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gm11628-201ENSMUST00000117568 171 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gm17823-201ENSMUST00000217830 1006 ntBASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Tssc1-207ENSMUST00000222407 489 ntTSL 3 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Upf1Q9EPU0 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Mif4gd-202ENSMUST00000106506 993 ntTSL 3 BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Gm45865-201ENSMUST00000211815 945 ntBASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Gm9368-201ENSMUST00000219348 831 ntBASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Rbck1-202ENSMUST00000109847 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Upf1Q9EPU0 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gm9333-201ENSMUST00000205452 1323 ntBASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gm22018-201ENSMUST00000104357 131 ntBASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gm16505-201ENSMUST00000179981 232 ntBASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Mir7032-201ENSMUST00000185154 79 ntBASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Gm18935-201ENSMUST00000212692 664 ntBASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 4930596D02Rik-201ENSMUST00000043266 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Cabp4-201ENSMUST00000025761 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Upf1Q9EPU0 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Gm22323-201ENSMUST00000103832 109 ntBASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Gm7118-201ENSMUST00000200167 1003 ntBASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.77■□□□□ 0.28
Upf1Q9EPU0 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms