Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Ddx56Q9D0R4 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Ddx56Q9D0R4 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Gm12008-201ENSMUST00000117791 755 ntBASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 AC154222.1-201ENSMUST00000223882 475 ntBASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC15.72■□□□□ 0.11
Ddx56Q9D0R4 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC15.71■□□□□ 0.11
Ddx56Q9D0R4 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms