Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Gm11452-201ENSMUST00000122376 690 ntBASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Gm10060-201ENSMUST00000212002 111 ntBASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim11Q99PQ2 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Best4-ps-201ENSMUST00000129783 1380 ntBASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Gm45167-201ENSMUST00000208007 322 ntBASIC17.06■□□□□ 0.32
Trim11Q99PQ2 AV026068-213ENSMUST00000223675 1171 ntBASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trim11Q99PQ2 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Gm21009-201ENSMUST00000197169 1669 ntBASIC17.05■□□□□ 0.32
Trim11Q99PQ2 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Rgs20-201ENSMUST00000002533 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trim11Q99PQ2 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Trim11Q99PQ2 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
Trim11Q99PQ2 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Trim11Q99PQ2 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms