Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Gm4535-201ENSMUST00000182274 558 ntBASIC15.5■□□□□ 0.07
Trim60Q8VI40 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Gm10355-201ENSMUST00000097146 517 ntBASIC15.5■□□□□ 0.07
Trim60Q8VI40 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Trim60Q8VI40 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.49■□□□□ 0.07
Trim60Q8VI40 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gm18489-201ENSMUST00000172565 551 ntBASIC15.49■□□□□ 0.07
Trim60Q8VI40 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 AC154757.1-201ENSMUST00000228289 336 ntBASIC15.49■□□□□ 0.07
Trim60Q8VI40 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gm29361-201ENSMUST00000183323 2000 ntBASIC15.49■□□□□ 0.07
Trim60Q8VI40 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Trim60Q8VI40 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Gm11780-201ENSMUST00000136880 516 ntBASIC15.48■□□□□ 0.07
Trim60Q8VI40 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Gm2308-201ENSMUST00000166539 1004 ntBASIC15.48■□□□□ 0.07
Trim60Q8VI40 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Trim60Q8VI40 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Gm11185-201ENSMUST00000117732 1007 ntBASIC15.47■□□□□ 0.07
Trim60Q8VI40 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC15.47■□□□□ 0.07
Trim60Q8VI40 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC15.47■□□□□ 0.07
Trim60Q8VI40 AC160338.1-201ENSMUST00000214232 705 ntBASIC15.47■□□□□ 0.07
Trim60Q8VI40 Gm18669-201ENSMUST00000216049 778 ntBASIC15.47■□□□□ 0.07
Trim60Q8VI40 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Trim60Q8VI40 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms