Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Usp40Q8BWR4 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Zbtb2-201ENSMUST00000100077 3086 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Msmp-201ENSMUST00000107884 743 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Trav13-3-201ENSMUST00000117226 336 ntBASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gm4691-201ENSMUST00000182339 1000 ntBASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Mir8102-201ENSMUST00000184148 139 ntBASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gm2451-201ENSMUST00000199447 999 ntBASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Gm10290-201ENSMUST00000200451 999 ntBASIC20.46■□□□□ 0.87
Usp40Q8BWR4 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Usp40Q8BWR4 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Usp40Q8BWR4 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Car10-205ENSMUST00000107861 2613 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Gm5566-201ENSMUST00000116118 459 ntBASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Kcnab2-202ENSMUST00000105648 1576 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Usp40Q8BWR4 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Gm8749-201ENSMUST00000117737 331 ntBASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Gm6944-201ENSMUST00000182449 1006 ntBASIC20.44■□□□□ 0.86
Usp40Q8BWR4 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Gm45098-201ENSMUST00000207179 657 ntBASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
Usp40Q8BWR4 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm9719-201ENSMUST00000162765 543 ntBASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm27680-201ENSMUST00000184192 160 ntBASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm30437-201ENSMUST00000206086 1201 ntBASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm7775-201ENSMUST00000218871 853 ntBASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gm43352-201ENSMUST00000196419 3065 ntBASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Usp40Q8BWR4 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms