Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Dmkn-203ENSMUST00000085688 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Scaf4Q6PFF0 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Gm8655-201ENSMUST00000221159 852 ntBASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Scaf4Q6PFF0 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Scaf4Q6PFF0 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Dmpk-201ENSMUST00000032568 2761 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
Scaf4Q6PFF0 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scaf4Q6PFF0 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Scaf4Q6PFF0 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Scaf4Q6PFF0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
Scaf4Q6PFF0 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms