Protein–RNA interactions for Protein: Q6IFX3

Krt40, Keratin, type I cytoskeletal 40, mousemouse

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt40Q6IFX3 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Krt40Q6IFX3 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Espnl-202ENSMUST00000176156 2886 ntTSL 5 BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Gm6539-201ENSMUST00000119157 1064 ntBASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Gm4691-201ENSMUST00000182339 1000 ntBASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Gm2451-201ENSMUST00000199447 999 ntBASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Gm10290-201ENSMUST00000200451 999 ntBASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Txnrd3-202ENSMUST00000101171 2494 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Krt40Q6IFX3 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gm37277-201ENSMUST00000194052 1111 ntBASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gm32351-201ENSMUST00000220503 438 ntTSL 5 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 AC126408.1-201ENSMUST00000225184 523 ntBASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Gm13517-201ENSMUST00000120782 1495 ntBASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Fgf11-202ENSMUST00000102585 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Krt40Q6IFX3 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm27618-201ENSMUST00000183671 60 ntBASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm18766-201ENSMUST00000189811 808 ntBASIC17.54■□□□□ 0.4
Krt40Q6IFX3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Gm45098-201ENSMUST00000207179 657 ntBASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Krt40Q6IFX3 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt40Q6IFX3 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Krt40Q6IFX3 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms