Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Gm11779-201ENSMUST00000118541 368 ntBASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Gm7229-201ENSMUST00000214719 1007 ntBASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Upf3bQ3ULL6 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Gm15467-201ENSMUST00000120582 445 ntBASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 AC090659.1-201ENSMUST00000224334 768 ntBASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Upf3bQ3ULL6 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Upf3bQ3ULL6 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 AC174742.1-201ENSMUST00000218272 304 ntBASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Upf3bQ3ULL6 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Upf3bQ3ULL6 Gm43195-201ENSMUST00000200614 2332 ntBASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms