Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Gm16011-201ENSMUST00000121567 2662 ntBASIC12.93□□□□□ -0.34
Nkx3-1P97436 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.93□□□□□ -0.34
Nkx3-1P97436 CT009510.1-201ENSMUST00000227972 270 ntBASIC12.93□□□□□ -0.34
Nkx3-1P97436 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
Nkx3-1P97436 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC12.92□□□□□ -0.34
Nkx3-1P97436 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC12.92□□□□□ -0.34
Nkx3-1P97436 Gm15483-201ENSMUST00000120338 456 ntBASIC12.92□□□□□ -0.34
Nkx3-1P97436 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Gm9824-201ENSMUST00000178707 561 ntBASIC12.92□□□□□ -0.34
Nkx3-1P97436 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.92□□□□□ -0.34
Nkx3-1P97436 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Pspc1-202ENSMUST00000163924 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Nkx3-1P97436 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm13517-201ENSMUST00000120782 1495 ntBASIC12.91□□□□□ -0.34
Nkx3-1P97436 AC093043.3-201ENSMUST00000226531 2273 ntBASIC12.91□□□□□ -0.34
Nkx3-1P97436 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm6415-201ENSMUST00000118488 348 ntBASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm15693-201ENSMUST00000120470 637 ntBASIC12.91□□□□□ -0.34
Nkx3-1P97436 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 4930593C16Rik-202ENSMUST00000214011 714 ntTSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Dnajb5-201ENSMUST00000037872 3291 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
Nkx3-1P97436 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 76,532 protein–RNA pairs in 45.4 ms