Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Cdx1P18111 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdx1P18111 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Cdx1P18111 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Cdx1P18111 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Acat2-201ENSMUST00000007005 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC12.12□□□□□ -0.47
Cdx1P18111 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Gm26513-201ENSMUST00000181802 2489 ntBASIC12.12□□□□□ -0.47
Cdx1P18111 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.12□□□□□ -0.47
Cdx1P18111 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Cdx1P18111 Gm24589-201ENSMUST00000116692 94 ntBASIC12.12□□□□□ -0.47
Cdx1P18111 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Cdx1P18111 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
Cdx1P18111 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
Cdx1P18111 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 AC166491.1-201ENSMUST00000227053 2308 ntBASIC12.12□□□□□ -0.47
Cdx1P18111 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC12.12□□□□□ -0.47
Cdx1P18111 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC12.12□□□□□ -0.47
Cdx1P18111 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Cdx1P18111 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Cdx1P18111 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Ash2l-204ENSMUST00000110610 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC12.11□□□□□ -0.47
Cdx1P18111 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Cdx1P18111 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC12.11□□□□□ -0.47
Cdx1P18111 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Cdx1P18111 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Cdx1P18111 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC12.11□□□□□ -0.47
Cdx1P18111 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC12.11□□□□□ -0.47
Cdx1P18111 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Cdx1P18111 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
Cdx1P18111 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
Cdx1P18111 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Rbfox2-206ENSMUST00000227314 1810 ntBASIC12.11□□□□□ -0.47
Cdx1P18111 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Prrg2-208ENSMUST00000210690 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Cdx1P18111 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
Cdx1P18111 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC12.1□□□□□ -0.47
Cdx1P18111 Olfr129-201ENSMUST00000122318 993 ntBASIC12.1□□□□□ -0.47
Cdx1P18111 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Gm44771-201ENSMUST00000206975 626 ntBASIC12.1□□□□□ -0.47
Cdx1P18111 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 AC133598.3-202ENSMUST00000224219 531 ntBASIC12.1□□□□□ -0.47
Cdx1P18111 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Tbkbp1-205ENSMUST00000118375 3288 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.47
Cdx1P18111 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Cdx1P18111 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms