Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.21□□□□□ -0.13
Lire1P11260 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.21□□□□□ -0.13
Lire1P11260 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC14.21□□□□□ -0.13
Lire1P11260 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC14.21□□□□□ -0.13
Lire1P11260 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.21□□□□□ -0.13
Lire1P11260 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lire1P11260 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Gm26761-201ENSMUST00000180650 2192 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lire1P11260 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Lire1P11260 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC14.21□□□□□ -0.13
Lire1P11260 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Lire1P11260 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Lire1P11260 Gm4780-202ENSMUST00000215200 2644 ntBASIC14.21□□□□□ -0.14
Lire1P11260 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Lire1P11260 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Lire1P11260 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Lire1P11260 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC14.2□□□□□ -0.14
Lire1P11260 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Gm7230-201ENSMUST00000173026 815 ntBASIC14.2□□□□□ -0.14
Lire1P11260 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Lire1P11260 Gm5364-201ENSMUST00000216789 889 ntBASIC14.2□□□□□ -0.14
Lire1P11260 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC14.2□□□□□ -0.14
Lire1P11260 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Rab3c-202ENSMUST00000223922 2398 ntBASIC14.2□□□□□ -0.14
Lire1P11260 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Kcnh4-202ENSMUST00000107363 3948 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Lire1P11260 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Lire1P11260 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Lire1P11260 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Cilp2-201ENSMUST00000057831 4314 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 Gm4535-201ENSMUST00000182274 558 ntBASIC14.19□□□□□ -0.14
Lire1P11260 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.19□□□□□ -0.14
Lire1P11260 Gm36967-201ENSMUST00000193814 266 ntBASIC14.19□□□□□ -0.14
Lire1P11260 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.19□□□□□ -0.14
Lire1P11260 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.19□□□□□ -0.14
Lire1P11260 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Lire1P11260 Gm10355-201ENSMUST00000097146 517 ntBASIC14.19□□□□□ -0.14
Lire1P11260 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.19□□□□□ -0.14
Lire1P11260 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Lire1P11260 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Lire1P11260 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC14.19□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms