Protein–RNA interactions for Protein: O88384

Vti1b, Vesicle transport through interaction with t-SNAREs homolog 1B, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1bO88384 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vti1bO88384 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vti1bO88384 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vti1bO88384 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC14.31□□□□□ -0.12
Vti1bO88384 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Vti1bO88384 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Vti1bO88384 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Vti1bO88384 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Vti1bO88384 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC14.3□□□□□ -0.12
Vti1bO88384 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.3□□□□□ -0.12
Vti1bO88384 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.3□□□□□ -0.12
Vti1bO88384 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.3□□□□□ -0.12
Vti1bO88384 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.3□□□□□ -0.12
Vti1bO88384 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Vti1bO88384 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Vti1bO88384 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Vti1bO88384 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Vti1bO88384 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.29□□□□□ -0.12
Vti1bO88384 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Gdpd2-202ENSMUST00000113744 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
Vti1bO88384 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Vti1bO88384 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.28□□□□□ -0.12
Vti1bO88384 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Tbx3-201ENSMUST00000018748 4856 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44357-201ENSMUST00000195897 142 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm19658-201ENSMUST00000196231 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44367-201ENSMUST00000196836 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44350-201ENSMUST00000197197 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44390-201ENSMUST00000197533 144 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44313-201ENSMUST00000198018 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44486-201ENSMUST00000198508 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44314-201ENSMUST00000199263 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44394-201ENSMUST00000199558 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44484-201ENSMUST00000199873 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44466-201ENSMUST00000200264 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 Gm44359-201ENSMUST00000200671 138 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.28□□□□□ -0.12
Vti1bO88384 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Vti1bO88384 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Vti1bO88384 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms