Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC12.44□□□□□ -0.42
Hmgb3O54879 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.42
Hmgb3O54879 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.44□□□□□ -0.42
Hmgb3O54879 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Irs3-201ENSMUST00000057314 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Egfr-201ENSMUST00000020329 10208 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Ddx42-201ENSMUST00000021046 4011 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Gm12134-201ENSMUST00000122109 520 ntBASIC12.43□□□□□ -0.42
Hmgb3O54879 Gm10052-201ENSMUST00000168019 960 ntBASIC12.43□□□□□ -0.42
Hmgb3O54879 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Gm7729-201ENSMUST00000050143 801 ntBASIC12.43□□□□□ -0.42
Hmgb3O54879 Gm7367-201ENSMUST00000057611 492 ntBASIC12.43□□□□□ -0.42
Hmgb3O54879 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Armcx4-201ENSMUST00000124226 7996 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Hmgb3O54879 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Hmgb3O54879 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Nupl1-207ENSMUST00000225311 2475 ntBASIC12.42□□□□□ -0.42
Hmgb3O54879 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC12.42□□□□□ -0.42
Hmgb3O54879 AC122351.1-201ENSMUST00000220467 126 ntBASIC12.42□□□□□ -0.42
Hmgb3O54879 Gm5417-201ENSMUST00000079706 384 ntBASIC12.42□□□□□ -0.42
Hmgb3O54879 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Brdt-201ENSMUST00000031215 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC12.42□□□□□ -0.42
Hmgb3O54879 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Hmgb3O54879 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC12.41□□□□□ -0.42
Hmgb3O54879 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC12.41□□□□□ -0.42
Hmgb3O54879 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC12.41□□□□□ -0.42
Hmgb3O54879 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Gm20760-201ENSMUST00000179197 648 ntBASIC12.41□□□□□ -0.42
Hmgb3O54879 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
Hmgb3O54879 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Hmgb3O54879 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 190.6 ms