Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
Prpf40aQ9R1C7 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Gm38042-201ENSMUST00000191614 5208 ntBASIC16.52■□□□□ 0.23
Prpf40aQ9R1C7 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Mib1-201ENSMUST00000052838 10231 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Gm9768-201ENSMUST00000206007 2861 ntBASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
Prpf40aQ9R1C7 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Gm16425-201ENSMUST00000118143 3130 ntBASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Gm7901-201ENSMUST00000120430 1597 ntBASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Prpf40aQ9R1C7 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Csnk1g1-212ENSMUST00000206048 2073 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Gm45167-201ENSMUST00000208007 322 ntBASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Tdrd6-201ENSMUST00000045717 7055 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Prpf40aQ9R1C7 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms