Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.82
Scn4aQ9ER60 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Scn4aQ9ER60 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Gm22334-201ENSMUST00000158070 133 ntBASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Gm17376-201ENSMUST00000166016 84 ntBASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Scn4aQ9ER60 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm43818-201ENSMUST00000200605 466 ntBASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gtf2a1l-201ENSMUST00000024970 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm6203-201ENSMUST00000209575 1342 ntBASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm6283-201ENSMUST00000182369 1000 ntBASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Scn4aQ9ER60 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Gm37812-201ENSMUST00000195216 2475 ntBASIC20.12■□□□□ 0.81
Scn4aQ9ER60 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 2010001A14Rik-203ENSMUST00000152790 714 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Proscos-202ENSMUST00000178990 666 ntBASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Gm29396-201ENSMUST00000185659 716 ntBASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Haus3-201ENSMUST00000060049 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Scn4aQ9ER60 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC20.11■□□□□ 0.81
Scn4aQ9ER60 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Gm5850-201ENSMUST00000192923 1206 ntBASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Gm27682-201ENSMUST00000183930 110 ntBASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Gm38158-201ENSMUST00000194617 339 ntBASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Il15-202ENSMUST00000209363 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Scn4aQ9ER60 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm12846-201ENSMUST00000120431 1373 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Egfl7-208ENSMUST00000149789 683 ntTSL 3 BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 2210408F21Rik-214ENSMUST00000155345 1022 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm24514-201ENSMUST00000174961 285 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 1700034G24Rik-202ENSMUST00000183186 1081 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm21470-201ENSMUST00000187680 696 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm29417-201ENSMUST00000188160 571 ntTSL 5 BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm38671-201ENSMUST00000200573 130 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm43947-201ENSMUST00000203019 959 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Gm18935-201ENSMUST00000212692 664 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Creld2-201ENSMUST00000024042 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Scn4aQ9ER60 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC20.09■□□□□ 0.81
Scn4aQ9ER60 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC20.09■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms