Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm7461-201ENSMUST00000058918 827 ntBASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC15.79■□□□□ 0.12
Ddx56Q9D0R4 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Gm11873-201ENSMUST00000117877 1304 ntBASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Gm18733-201ENSMUST00000173950 856 ntBASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Gm27300-201ENSMUST00000184085 97 ntBASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Gm27335-201ENSMUST00000184758 97 ntBASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 AC164567.1-201ENSMUST00000219185 960 ntBASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Ddx56Q9D0R4 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Ddx56Q9D0R4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ddx56Q9D0R4 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
Ddx56Q9D0R4 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Ddx56Q9D0R4 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.77■□□□□ 0.11
Ddx56Q9D0R4 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC15.77■□□□□ 0.11
Ddx56Q9D0R4 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Hykk-201ENSMUST00000039742 5110 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Ddx56Q9D0R4 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 AC025913.2-201ENSMUST00000220136 1766 ntBASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Rpl13-ps5-201ENSMUST00000117813 630 ntBASIC15.75■□□□□ 0.11
Ddx56Q9D0R4 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms