Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Gm45133-201ENSMUST00000207548 2773 ntBASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Gm10605-202ENSMUST00000183019 3198 ntBASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Trim9Q8C7M3 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Carlr-201ENSMUST00000181515 2574 ntBASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trim9Q8C7M3 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Gm42632-201ENSMUST00000201707 2411 ntBASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trim9Q8C7M3 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trim9Q8C7M3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.52■□□□□ 0.23
Trim9Q8C7M3 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms