Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Gm10154-201ENSMUST00000084445 354 ntBASIC15.14■□□□□ 0.01
Six4Q61321 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC15.14■□□□□ 0.01
Six4Q61321 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Pnliprp2-201ENSMUST00000026081 1567 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Six4Q61321 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Six4Q61321 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.13■□□□□ 0.01
Six4Q61321 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Gm15593-201ENSMUST00000122085 1008 ntBASIC15.13■□□□□ 0.01
Six4Q61321 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Gm25911-201ENSMUST00000157621 56 ntBASIC15.13■□□□□ 0.01
Six4Q61321 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Six4Q61321 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.13■□□□□ 0.01
Six4Q61321 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC15.13■□□□□ 0.01
Six4Q61321 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Six4Q61321 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Six4Q61321 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.13■□□□□ 0.01
Six4Q61321 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Gm9768-201ENSMUST00000206007 2861 ntBASIC15.12■□□□□ 0.01
Six4Q61321 Cacnb1-201ENSMUST00000017552 3396 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.12■□□□□ 0.01
Six4Q61321 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC15.12■□□□□ 0.01
Six4Q61321 H2af-ps-201ENSMUST00000119066 295 ntBASIC15.12■□□□□ 0.01
Six4Q61321 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.12■□□□□ 0.01
Six4Q61321 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.12■□□□□ 0.01
Six4Q61321 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Six4Q61321 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Six4Q61321 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Six4Q61321 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Six4Q61321 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Six4Q61321 Gm11594-201ENSMUST00000122313 162 ntBASIC15.11■□□□□ 0.01
Six4Q61321 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Six4Q61321 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.11■□□□□ 0.01
Six4Q61321 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC15.11■□□□□ 0.01
Six4Q61321 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Six4Q61321 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Six4Q61321 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Six4Q61321 Htr7-205ENSMUST00000166074 3079 ntTSL 5 BASIC15.11■□□□□ 0.01
Six4Q61321 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Kat8-201ENSMUST00000033070 1579 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Six4Q61321 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms