Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.66■□□□□ 0.42
Limch1Q3UH68 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Efs-202ENSMUST00000227037 2540 ntBASIC17.65■□□□□ 0.42
Limch1Q3UH68 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Gm10499-201ENSMUST00000174094 934 ntBASIC17.65■□□□□ 0.42
Limch1Q3UH68 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Limch1Q3UH68 Anks1-201ENSMUST00000025058 6844 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Limch1Q3UH68 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Gm4913-201ENSMUST00000117075 1290 ntBASIC17.64■□□□□ 0.41
Limch1Q3UH68 H2af-ps-201ENSMUST00000119066 295 ntBASIC17.64■□□□□ 0.41
Limch1Q3UH68 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Gm18489-201ENSMUST00000172565 551 ntBASIC17.64■□□□□ 0.41
Limch1Q3UH68 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Limch1Q3UH68 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.63■□□□□ 0.41
Limch1Q3UH68 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 AC131709.1-201ENSMUST00000224731 1180 ntBASIC17.63■□□□□ 0.41
Limch1Q3UH68 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.63■□□□□ 0.41
Limch1Q3UH68 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.63■□□□□ 0.41
Limch1Q3UH68 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Limch1Q3UH68 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.62■□□□□ 0.41
Limch1Q3UH68 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Limch1Q3UH68 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms