Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Spag16-201ENSMUST00000065425 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cdh11P55288 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Asf1b-201ENSMUST00000005607 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Gm4535-201ENSMUST00000182274 558 ntBASIC13.69□□□□□ -0.22
Cdh11P55288 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Gm10060-201ENSMUST00000212002 111 ntBASIC13.69□□□□□ -0.22
Cdh11P55288 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC13.69□□□□□ -0.22
Cdh11P55288 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Gm10355-201ENSMUST00000097146 517 ntBASIC13.69□□□□□ -0.22
Cdh11P55288 Gm10605-202ENSMUST00000183019 3198 ntBASIC13.69□□□□□ -0.22
Cdh11P55288 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Cdh11P55288 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Cdh11P55288 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Cdh11P55288 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC13.69□□□□□ -0.22
Cdh11P55288 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Cdh11P55288 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.68□□□□□ -0.22
Cdh11P55288 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC13.68□□□□□ -0.22
Cdh11P55288 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Gm18206-201ENSMUST00000207027 926 ntBASIC13.68□□□□□ -0.22
Cdh11P55288 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Gm9172-201ENSMUST00000212092 954 ntBASIC13.68□□□□□ -0.22
Cdh11P55288 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Ap5m1-205ENSMUST00000227431 3757 ntBASIC13.68□□□□□ -0.22
Cdh11P55288 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Cdh11P55288 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Cdh11P55288 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Cdh11P55288 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.67□□□□□ -0.22
Cdh11P55288 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdh11P55288 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Ntng2-210ENSMUST00000177689 1679 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Cdh11P55288 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Cdh11P55288 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Cdh11P55288 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms