Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC12.34□□□□□ -0.43
Sdc1P18828 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC12.34□□□□□ -0.43
Sdc1P18828 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC12.34□□□□□ -0.43
Sdc1P18828 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Sdc1P18828 Zfp740-201ENSMUST00000118729 4241 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Gm44981-201ENSMUST00000205549 1943 ntBASIC12.34□□□□□ -0.43
Sdc1P18828 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Map2k6-201ENSMUST00000020949 2068 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC12.34□□□□□ -0.43
Sdc1P18828 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
Sdc1P18828 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC12.33□□□□□ -0.43
Sdc1P18828 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Sdc1P18828 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.33□□□□□ -0.44
Sdc1P18828 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.33□□□□□ -0.44
Sdc1P18828 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Sdc1P18828 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.33□□□□□ -0.44
Sdc1P18828 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Sdc1P18828 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC12.33□□□□□ -0.44
Sdc1P18828 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC12.33□□□□□ -0.44
Sdc1P18828 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC12.33□□□□□ -0.44
Sdc1P18828 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
Sdc1P18828 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Hist1h1e-201ENSMUST00000062045 1930 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Sdc1P18828 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
Sdc1P18828 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Slc25a25-204ENSMUST00000113308 2643 ntTSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC12.32□□□□□ -0.44
Sdc1P18828 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC12.32□□□□□ -0.44
Sdc1P18828 Gm42569-201ENSMUST00000200539 472 ntBASIC12.32□□□□□ -0.44
Sdc1P18828 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC12.32□□□□□ -0.44
Sdc1P18828 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Sdc1P18828 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC12.32□□□□□ -0.44
Sdc1P18828 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Cep170b-204ENSMUST00000220627 5395 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Sdc1P18828 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Sdc1P18828 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms