Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.76■□□□□ 0.43
Col3a1P08121 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Col3a1P08121 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Col3a1P08121 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Col3a1P08121 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Col3a1P08121 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Gm9726-201ENSMUST00000180321 678 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Col3a1P08121 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Col3a1P08121 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 4930417O22Rik-201ENSMUST00000123249 1184 ntTSL 2 BASIC17.75■□□□□ 0.43
Col3a1P08121 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Gm24694-201ENSMUST00000180054 110 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Gm27631-201ENSMUST00000184163 466 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Gm27663-201ENSMUST00000184839 110 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Gm2423-201ENSMUST00000074863 733 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC17.75■□□□□ 0.43
Col3a1P08121 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC17.75■□□□□ 0.43
Col3a1P08121 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Col3a1P08121 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC17.74■□□□□ 0.43
Col3a1P08121 Gm45453-201ENSMUST00000211758 853 ntBASIC17.74■□□□□ 0.43
Col3a1P08121 Gm9182-201ENSMUST00000217829 639 ntBASIC17.74■□□□□ 0.43
Col3a1P08121 S100a13-201ENSMUST00000048138 715 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Col3a1P08121 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Col3a1P08121 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Col3a1P08121 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC17.73■□□□□ 0.43
Col3a1P08121 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 AC123645.1-201ENSMUST00000228469 605 ntBASIC17.73■□□□□ 0.43
Col3a1P08121 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
Col3a1P08121 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Col3a1P08121 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Col3a1P08121 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 AC149588.3-201ENSMUST00000227515 150 ntBASIC17.72■□□□□ 0.43
Col3a1P08121 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.72■□□□□ 0.43
Col3a1P08121 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Col3a1P08121 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Col3a1P08121 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col3a1P08121 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Col3a1P08121 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Col3a1P08121 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC17.71■□□□□ 0.43
Col3a1P08121 Gm15321-201ENSMUST00000121290 288 ntBASIC17.71■□□□□ 0.43
Col3a1P08121 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms