Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Cep55-203ENSMUST00000169673 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.32□□□□□ -0.12
Clk3O35492 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC14.32□□□□□ -0.12
Clk3O35492 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.32□□□□□ -0.12
Clk3O35492 Slit1-202ENSMUST00000166496 4556 ntTSL 5 BASIC14.32□□□□□ -0.12
Clk3O35492 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Akt2-202ENSMUST00000085917 1392 ntTSL 5 BASIC14.32□□□□□ -0.12
Clk3O35492 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Clk3O35492 Fgfr3-201ENSMUST00000067150 4218 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Clk3O35492 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Clk3O35492 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Clk3O35492 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Clk3O35492 Gm28659-201ENSMUST00000188013 759 ntBASIC14.31□□□□□ -0.12
Clk3O35492 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.31□□□□□ -0.12
Clk3O35492 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Clk3O35492 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Clk3O35492 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.31□□□□□ -0.12
Clk3O35492 Dnase1l2-201ENSMUST00000088506 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Clk3O35492 Gm37019-201ENSMUST00000192133 2134 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Arhgef5-201ENSMUST00000031750 5469 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Clk3O35492 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Clk3O35492 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Gapvd1-202ENSMUST00000102800 8339 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Gm4535-201ENSMUST00000182274 558 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC14.3□□□□□ -0.12
Clk3O35492 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC14.3□□□□□ -0.12
Clk3O35492 AC154757.1-201ENSMUST00000228289 336 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Rps4l-201ENSMUST00000071745 943 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Gm10355-201ENSMUST00000097146 517 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.3□□□□□ -0.12
Clk3O35492 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
Clk3O35492 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Clk3O35492 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Clk3O35492 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Clk3O35492 Ddhd1-203ENSMUST00000111828 9802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Clk3O35492 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.29□□□□□ -0.12
Clk3O35492 Gm6376-201ENSMUST00000209407 580 ntBASIC14.29□□□□□ -0.12
Clk3O35492 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.29□□□□□ -0.12
Clk3O35492 Gm18856-201ENSMUST00000178096 1374 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms