Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Mir1894-201ENSMUST00000122802 81 ntBASIC12.06□□□□□ -0.48
Chd6A3KFM7 Spdye4b-202ENSMUST00000159781 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Neat1-203ENSMUST00000174829 1030 ntTSL 5 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Gm16505-201ENSMUST00000179981 232 ntBASIC12.06□□□□□ -0.48
Chd6A3KFM7 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Slc9a3r1-201ENSMUST00000021077 1925 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Gm11814-201ENSMUST00000119515 929 ntBASIC12.06□□□□□ -0.48
Chd6A3KFM7 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Mir433-201ENSMUST00000093564 124 ntBASIC12.06□□□□□ -0.48
Chd6A3KFM7 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Chd6A3KFM7 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC12.05□□□□□ -0.48
Chd6A3KFM7 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Coro6-203ENSMUST00000079770 1298 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Gfpt1-203ENSMUST00000113657 1200 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Ict1os-201ENSMUST00000125653 1052 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Gm4819-201ENSMUST00000182170 1009 ntBASIC12.05□□□□□ -0.48
Chd6A3KFM7 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Gm45880-201ENSMUST00000213041 853 ntBASIC12.05□□□□□ -0.48
Chd6A3KFM7 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Chd6A3KFM7 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm9333-201ENSMUST00000205452 1323 ntBASIC12.04□□□□□ -0.48
Chd6A3KFM7 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm5523-201ENSMUST00000180415 997 ntBASIC12.04□□□□□ -0.48
Chd6A3KFM7 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm8099-201ENSMUST00000200510 742 ntBASIC12.04□□□□□ -0.48
Chd6A3KFM7 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm40466-201ENSMUST00000212174 422 ntBASIC12.04□□□□□ -0.48
Chd6A3KFM7 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC12.04□□□□□ -0.48
Chd6A3KFM7 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms