Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm25349-201ENSMUST00000177728 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm23616-201ENSMUST00000177797 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm25871-201ENSMUST00000177816 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm24752-201ENSMUST00000178240 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm24496-201ENSMUST00000178287 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm25649-201ENSMUST00000178476 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm25548-201ENSMUST00000178681 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm23147-201ENSMUST00000178841 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm26095-201ENSMUST00000179270 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm22171-201ENSMUST00000179283 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm23936-201ENSMUST00000179354 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm22619-201ENSMUST00000179516 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm25255-201ENSMUST00000179579 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm24755-201ENSMUST00000179691 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm26506-201ENSMUST00000179692 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm25086-201ENSMUST00000179931 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm23243-201ENSMUST00000180047 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm24659-201ENSMUST00000180212 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm24169-201ENSMUST00000180244 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm23689-201ENSMUST00000180354 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm27359-201ENSMUST00000184153 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm27785-201ENSMUST00000184268 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm27466-201ENSMUST00000184396 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Gm27703-201ENSMUST00000184836 110 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Trim54Q9ERP3 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
Trim54Q9ERP3 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Pdhb-201ENSMUST00000022268 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Zfp715-201ENSMUST00000012796 907 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Gm16026-204ENSMUST00000162652 683 ntBASIC16.26■□□□□ 0.19
Trim54Q9ERP3 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Gm10253-201ENSMUST00000194270 940 ntBASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 AC131710.1-201ENSMUST00000228336 990 ntBASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 App-207ENSMUST00000227737 2827 ntBASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Gm44443-201ENSMUST00000204396 5633 ntBASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC16.26■□□□□ 0.19
Trim54Q9ERP3 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Gm5779-201ENSMUST00000218467 910 ntBASIC16.25■□□□□ 0.19
Trim54Q9ERP3 CT009510.1-201ENSMUST00000227972 270 ntBASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Trim54Q9ERP3 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms