Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lima1Q9ERG0 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Gm15165-201ENSMUST00000118140 502 ntBASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Gm38318-201ENSMUST00000195769 1706 ntBASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lima1Q9ERG0 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Samd14-201ENSMUST00000055947 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm43399-201ENSMUST00000202546 2374 ntBASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Gm17807-201ENSMUST00000186869 298 ntBASIC14.87□□□□□ -0.03
Lima1Q9ERG0 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 AC108846.1-201ENSMUST00000214531 513 ntBASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lima1Q9ERG0 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Gm9172-201ENSMUST00000212092 954 ntBASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lima1Q9ERG0 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms