Protein–RNA interactions for Protein: Q9D2H5

Trim42, Tripartite motif-containing protein 42, mousemouse

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim42Q9D2H5 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim42Q9D2H5 Hmgn1-201ENSMUST00000050884 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim42Q9D2H5 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim42Q9D2H5 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Trim42Q9D2H5 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Nfasc-201ENSMUST00000043189 5072 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC15.06■□□□□ 0
Trim42Q9D2H5 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Sgta-202ENSMUST00000218208 1964 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
Trim42Q9D2H5 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC15.06■□□□□ 0
Trim42Q9D2H5 Gm7507-201ENSMUST00000183053 1008 ntBASIC15.06■□□□□ 0
Trim42Q9D2H5 Gm21559-201ENSMUST00000220638 855 ntBASIC15.06■□□□□ 0
Trim42Q9D2H5 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Gm8587-201ENSMUST00000076538 843 ntBASIC15.06■□□□□ 0
Trim42Q9D2H5 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
Trim42Q9D2H5 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.06■□□□□ 0
Trim42Q9D2H5 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 AC153366.2-201ENSMUST00000219461 1984 ntBASIC15.05■□□□□ 0
Trim42Q9D2H5 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC15.05■□□□□ 0
Trim42Q9D2H5 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC15.05■□□□□ 0
Trim42Q9D2H5 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Trim42Q9D2H5 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
Trim42Q9D2H5 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.05■□□□□ 0
Trim42Q9D2H5 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Mir6982-201ENSMUST00000184354 68 ntBASIC15.05■□□□□ -0
Trim42Q9D2H5 Gm9484-201ENSMUST00000195892 1159 ntBASIC15.05■□□□□ -0
Trim42Q9D2H5 Gm18959-201ENSMUST00000208954 655 ntBASIC15.05■□□□□ -0
Trim42Q9D2H5 AC134329.2-201ENSMUST00000217897 428 ntBASIC15.05■□□□□ -0
Trim42Q9D2H5 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
Trim42Q9D2H5 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.05■□□□□ -0
Trim42Q9D2H5 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Tmem9b-202ENSMUST00000118571 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
Trim42Q9D2H5 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Trim42Q9D2H5 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Gm38318-201ENSMUST00000195769 1706 ntBASIC15.04■□□□□ -0
Trim42Q9D2H5 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Gm7556-201ENSMUST00000201178 1084 ntBASIC15.04■□□□□ -0
Trim42Q9D2H5 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Trim42Q9D2H5 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Trim42Q9D2H5 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms