Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Vps28Q9D1C8 BC037039-201ENSMUST00000192003 2205 ntBASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.41■□□□□ 0.06
Vps28Q9D1C8 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Gnas-211ENSMUST00000109096 2465 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Vps28Q9D1C8 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Gm4995-201ENSMUST00000117247 432 ntBASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Vps28Q9D1C8 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm4913-201ENSMUST00000117075 1290 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm12008-201ENSMUST00000117791 755 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm5177-201ENSMUST00000183092 997 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm17968-201ENSMUST00000194902 784 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm44492-201ENSMUST00000197012 141 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm5867-201ENSMUST00000063197 592 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 AC174678.1-201ENSMUST00000228007 2749 ntBASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm8237-201ENSMUST00000164484 2051 ntAPPRIS P5 TSL 5 BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Vps28Q9D1C8 Gm13034-201ENSMUST00000121342 3177 ntBASIC15.38■□□□□ 0.05
Vps28Q9D1C8 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Vps28Q9D1C8 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.38■□□□□ 0.05
Vps28Q9D1C8 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps28Q9D1C8 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Vps28Q9D1C8 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms