Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Pax7-201ENSMUST00000030508 5854 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Use1Q9CQ56 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.24□□□□□ -0.13
Use1Q9CQ56 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Daxx-201ENSMUST00000079421 2580 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Gm8097-201ENSMUST00000117903 829 ntBASIC14.24□□□□□ -0.13
Use1Q9CQ56 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Cmtm5-203ENSMUST00000227441 610 ntBASIC14.24□□□□□ -0.13
Use1Q9CQ56 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Pard3b-202ENSMUST00000075374 8392 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Psen2-204ENSMUST00000111106 2020 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Use1Q9CQ56 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Gm12895-201ENSMUST00000122214 226 ntBASIC14.23□□□□□ -0.13
Use1Q9CQ56 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.23□□□□□ -0.13
Use1Q9CQ56 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.23□□□□□ -0.13
Use1Q9CQ56 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Use1Q9CQ56 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.22□□□□□ -0.13
Use1Q9CQ56 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Gm8318-201ENSMUST00000182954 872 ntBASIC14.22□□□□□ -0.13
Use1Q9CQ56 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Use1Q9CQ56 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Use1Q9CQ56 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms