Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Usp49Q6P9L4 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.83■□□□□ 0.29
Usp49Q6P9L4 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Usp49Q6P9L4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm20708-201ENSMUST00000132298 1780 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm21009-201ENSMUST00000197169 1669 ntBASIC16.83■□□□□ 0.28
Usp49Q6P9L4 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm2651-201ENSMUST00000203560 838 ntBASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Usp49Q6P9L4 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Gm11960-202ENSMUST00000181063 2858 ntBASIC16.82■□□□□ 0.28
Usp49Q6P9L4 Pid1-207ENSMUST00000177458 2521 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC16.81■□□□□ 0.28
Usp49Q6P9L4 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 AC084391.1-201ENSMUST00000200651 141 ntBASIC16.81■□□□□ 0.28
Usp49Q6P9L4 AC138767.1-201ENSMUST00000222661 415 ntBASIC16.81■□□□□ 0.28
Usp49Q6P9L4 AC131709.1-201ENSMUST00000224731 1180 ntBASIC16.81■□□□□ 0.28
Usp49Q6P9L4 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Usp49Q6P9L4 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms