Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ShhQ62226 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ShhQ62226 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC14.03□□□□□ -0.16
ShhQ62226 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.03□□□□□ -0.16
ShhQ62226 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.03□□□□□ -0.16
ShhQ62226 Esd-207ENSMUST00000176957 1117 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ShhQ62226 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.03□□□□□ -0.16
ShhQ62226 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Prkcz2-201ENSMUST00000206136 1756 ntBASIC14.03□□□□□ -0.16
ShhQ62226 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ShhQ62226 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Slc4a1ap-206ENSMUST00000201858 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ShhQ62226 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ShhQ62226 Zfp651-201ENSMUST00000093772 6353 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
ShhQ62226 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
ShhQ62226 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
ShhQ62226 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.02□□□□□ -0.16
ShhQ62226 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ShhQ62226 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
ShhQ62226 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC14.02□□□□□ -0.17
ShhQ62226 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Gm44492-201ENSMUST00000197012 141 ntBASIC14.02□□□□□ -0.17
ShhQ62226 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 AC127302.2-201ENSMUST00000215212 268 ntBASIC14.02□□□□□ -0.17
ShhQ62226 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC14.02□□□□□ -0.17
ShhQ62226 AC131187.1-201ENSMUST00000224567 809 ntBASIC14.02□□□□□ -0.17
ShhQ62226 AC154572.2-201ENSMUST00000225105 997 ntBASIC14.02□□□□□ -0.17
ShhQ62226 AC159295.1-201ENSMUST00000225326 940 ntBASIC14.02□□□□□ -0.17
ShhQ62226 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC14.02□□□□□ -0.17
ShhQ62226 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ShhQ62226 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Dot1l-201ENSMUST00000105336 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gm9867-201ENSMUST00000192212 2647 ntBASIC14.01□□□□□ -0.17
ShhQ62226 March4-201ENSMUST00000047786 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gm5682-201ENSMUST00000173402 505 ntBASIC14.01□□□□□ -0.17
ShhQ62226 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.01□□□□□ -0.17
ShhQ62226 Gm27300-201ENSMUST00000184085 97 ntBASIC14.01□□□□□ -0.17
ShhQ62226 Gm27335-201ENSMUST00000184758 97 ntBASIC14.01□□□□□ -0.17
ShhQ62226 Gm45167-201ENSMUST00000208007 322 ntBASIC14.01□□□□□ -0.17
ShhQ62226 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC14.01□□□□□ -0.17
ShhQ62226 AC140375.2-201ENSMUST00000225283 584 ntBASIC14.01□□□□□ -0.17
ShhQ62226 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
ShhQ62226 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
ShhQ62226 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms