Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Ttc13-210ENSMUST00000214828 3301 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trav6-3Q5R1E6 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gm29361-201ENSMUST00000183323 2000 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Susd6-201ENSMUST00000068519 4977 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gm21009-201ENSMUST00000197169 1669 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gm18669-201ENSMUST00000216049 778 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 AC154757.1-201ENSMUST00000228289 336 ntBASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trav6-3Q5R1E6 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Sema4c-203ENSMUST00000191677 3779 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC12.07□□□□□ -0.48
Trav6-3Q5R1E6 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Gm11185-201ENSMUST00000117732 1007 ntBASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 AC158538.1-201ENSMUST00000225870 294 ntBASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Trav6-3Q5R1E6 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms