Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Usp28Q5I043 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp28Q5I043 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC17.1■□□□□ 0.33
Usp28Q5I043 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Usp28Q5I043 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm37153-201ENSMUST00000193637 231 ntBASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm9682-201ENSMUST00000197505 556 ntBASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.1■□□□□ 0.33
Usp28Q5I043 AC154757.1-201ENSMUST00000228289 336 ntBASIC17.1■□□□□ 0.33
Usp28Q5I043 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Usp28Q5I043 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.09■□□□□ 0.33
Usp28Q5I043 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.09■□□□□ 0.33
Usp28Q5I043 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.09■□□□□ 0.33
Usp28Q5I043 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.09■□□□□ 0.33
Usp28Q5I043 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Usp28Q5I043 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC17.09■□□□□ 0.33
Usp28Q5I043 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp28Q5I043 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp28Q5I043 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp28Q5I043 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC17.08■□□□□ 0.33
Usp28Q5I043 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Usp28Q5I043 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC17.08■□□□□ 0.32
Usp28Q5I043 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC17.08■□□□□ 0.32
Usp28Q5I043 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Nupl1-207ENSMUST00000225311 2475 ntBASIC17.08■□□□□ 0.32
Usp28Q5I043 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Usp28Q5I043 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Usp28Q5I043 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Sorbs3-204ENSMUST00000227929 2460 ntBASIC17.07■□□□□ 0.32
Usp28Q5I043 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.07■□□□□ 0.32
Usp28Q5I043 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Usp28Q5I043 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Gm27459-201ENSMUST00000184860 107 ntBASIC17.07■□□□□ 0.32
Usp28Q5I043 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.07■□□□□ 0.32
Usp28Q5I043 Birc2-201ENSMUST00000054878 378 ntBASIC17.07■□□□□ 0.32
Usp28Q5I043 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 60.6 ms