Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Rnf180Q3U827 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm15411-202ENSMUST00000201913 668 ntTSL 3 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Gm29787-201ENSMUST00000222129 849 ntBASIC17.47■□□□□ 0.39
Rnf180Q3U827 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Phgdh-201ENSMUST00000065793 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Rnf180Q3U827 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Gm11628-201ENSMUST00000117568 171 ntBASIC17.46■□□□□ 0.39
Rnf180Q3U827 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC17.46■□□□□ 0.39
Rnf180Q3U827 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Gm2383-201ENSMUST00000181461 807 ntBASIC17.46■□□□□ 0.39
Rnf180Q3U827 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Rnf180Q3U827 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Rnf180Q3U827 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
Rnf180Q3U827 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 AC153872.1-201ENSMUST00000199539 128 ntBASIC17.45■□□□□ 0.38
Rnf180Q3U827 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.45■□□□□ 0.38
Rnf180Q3U827 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Gm9333-201ENSMUST00000205452 1323 ntBASIC17.45■□□□□ 0.38
Rnf180Q3U827 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Rnf180Q3U827 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 AC133598.1-201ENSMUST00000224327 660 ntBASIC17.44■□□□□ 0.38
Rnf180Q3U827 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Pole2-201ENSMUST00000021359 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Rnf180Q3U827 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf180Q3U827 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Isg20-202ENSMUST00000118867 697 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Gm16177-201ENSMUST00000120728 718 ntBASIC17.43■□□□□ 0.38
Rnf180Q3U827 C030017D09Rik-201ENSMUST00000163690 923 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Gm4804-201ENSMUST00000182234 999 ntBASIC17.43■□□□□ 0.38
Rnf180Q3U827 Gm27320-201ENSMUST00000184892 109 ntBASIC17.43■□□□□ 0.38
Rnf180Q3U827 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC17.43■□□□□ 0.38
Rnf180Q3U827 Gm9368-201ENSMUST00000219348 831 ntBASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms