Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
Cdh11P55288 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC13.73□□□□□ -0.21
Cdh11P55288 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Gm7862-201ENSMUST00000121461 292 ntBASIC13.73□□□□□ -0.21
Cdh11P55288 Gm12134-201ENSMUST00000122109 520 ntBASIC13.73□□□□□ -0.21
Cdh11P55288 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC13.73□□□□□ -0.21
Cdh11P55288 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Gm7506-201ENSMUST00000207758 815 ntBASIC13.73□□□□□ -0.21
Cdh11P55288 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
Cdh11P55288 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC13.73□□□□□ -0.21
Cdh11P55288 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
Cdh11P55288 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC13.73□□□□□ -0.21
Cdh11P55288 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Cdh11P55288 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.73□□□□□ -0.21
Cdh11P55288 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
Cdh11P55288 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Cdh11P55288 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Cdh11P55288 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.72□□□□□ -0.21
Cdh11P55288 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Mir6404-201ENSMUST00000183699 94 ntBASIC13.72□□□□□ -0.21
Cdh11P55288 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC13.72□□□□□ -0.21
Cdh11P55288 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC13.72□□□□□ -0.21
Cdh11P55288 Rbfox2-207ENSMUST00000227533 1041 ntBASIC13.72□□□□□ -0.21
Cdh11P55288 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.72□□□□□ -0.21
Cdh11P55288 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Gm45504-201ENSMUST00000211407 2107 ntBASIC13.72□□□□□ -0.21
Cdh11P55288 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Cdh11P55288 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC13.71□□□□□ -0.21
Cdh11P55288 AC148324.1-201ENSMUST00000219034 4240 ntBASIC13.71□□□□□ -0.21
Cdh11P55288 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC13.71□□□□□ -0.21
Cdh11P55288 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Gm12497-201ENSMUST00000138778 237 ntBASIC13.71□□□□□ -0.21
Cdh11P55288 Mir5131-201ENSMUST00000175426 93 ntBASIC13.71□□□□□ -0.21
Cdh11P55288 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC13.71□□□□□ -0.21
Cdh11P55288 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC13.71□□□□□ -0.21
Cdh11P55288 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC13.71□□□□□ -0.21
Cdh11P55288 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC13.71□□□□□ -0.21
Cdh11P55288 AC138767.1-201ENSMUST00000222661 415 ntBASIC13.71□□□□□ -0.21
Cdh11P55288 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Cdh11P55288 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Cdh11P55288 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC13.71□□□□□ -0.22
Cdh11P55288 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Cdh11P55288 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Camk2g-217ENSMUST00000226630 1937 ntBASIC13.7□□□□□ -0.22
Cdh11P55288 Rsbn1l-201ENSMUST00000036489 5550 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
Cdh11P55288 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
Cdh11P55288 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Cdh11P55288 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Cdh11P55288 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms