Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm11764-201ENSMUST00000120221 623 ntBASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm9682-201ENSMUST00000197505 556 ntBASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Rlf-201ENSMUST00000056635 6242 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Chmp6P0C0A3 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Glis1-202ENSMUST00000106738 2744 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Gm14722-201ENSMUST00000118943 689 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Gm18489-201ENSMUST00000172565 551 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Gm5364-201ENSMUST00000216789 889 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 AC154222.1-201ENSMUST00000223882 475 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Chmp6P0C0A3 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Kmt5c-202ENSMUST00000108582 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Dhrs7c-205ENSMUST00000168612 1108 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Cep19-202ENSMUST00000115168 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 AC174678.1-201ENSMUST00000228007 2749 ntBASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Chmp6P0C0A3 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Gm11453-201ENSMUST00000117318 1007 ntBASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 AW822252-206ENSMUST00000208904 237 ntBASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Chmp6P0C0A3 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms