Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tmem150cos-201ENSMUST00000143245 1216 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Cklf-210ENSMUST00000212939 737 ntAPPRIS ALT2 TSL 3 BASIC11.72□□□□□ -0.53
Hoxd3P09027 AC125117.2-201ENSMUST00000228344 1140 ntBASIC11.72□□□□□ -0.53
Hoxd3P09027 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Zkscan17-202ENSMUST00000101150 3771 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Exo5-204ENSMUST00000177880 1969 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Exo5-201ENSMUST00000030375 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Hoxd3P09027 Por-202ENSMUST00000122113 2606 ntTSL 2 BASIC11.72□□□□□ -0.53
Hoxd3P09027 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC11.71□□□□□ -0.53
Hoxd3P09027 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Ephb1-203ENSMUST00000149800 3471 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC11.71□□□□□ -0.53
Hoxd3P09027 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Hoxd3P09027 Gm45747-201ENSMUST00000212203 999 ntBASIC11.71□□□□□ -0.53
Hoxd3P09027 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Hoxd3P09027 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Sox13-205ENSMUST00000153799 3693 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Hoxd3P09027 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hoxd3P09027 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hoxd3P09027 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hoxd3P09027 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Hoxd3P09027 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Hoxd3P09027 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC11.71□□□□□ -0.54
Hoxd3P09027 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.54
Hoxd3P09027 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Rps6kb2-202ENSMUST00000118483 1409 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC11.7□□□□□ -0.54
Hoxd3P09027 AC151286.1-201ENSMUST00000198489 145 ntBASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 AC159246.1-201ENSMUST00000214478 249 ntBASIC11.7□□□□□ -0.54
Hoxd3P09027 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Hoxd3P09027 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
Hoxd3P09027 Gm45605-201ENSMUST00000210265 4269 ntBASIC11.7□□□□□ -0.54
Hoxd3P09027 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Strn4-202ENSMUST00000108495 3082 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
Hoxd3P09027 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC11.69□□□□□ -0.54
Hoxd3P09027 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Hoxd3P09027 Gm15427-201ENSMUST00000117288 531 ntBASIC11.69□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms