Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Vti1aO89116 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Bnip2-202ENSMUST00000085393 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC16.21■□□□□ 0.19
Vti1aO89116 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Vti1aO89116 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Vti1aO89116 Wt1-201ENSMUST00000111098 2395 ntTSL 5 BASIC16.21■□□□□ 0.19
Vti1aO89116 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Vti1aO89116 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Vti1aO89116 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Vti1aO89116 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Susd3-202ENSMUST00000058196 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC16.2■□□□□ 0.18
Vti1aO89116 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Vti1aO89116 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Nap1l5-201ENSMUST00000059539 1844 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Vti1aO89116 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Atf7ip2-203ENSMUST00000117220 1230 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Gm11745-201ENSMUST00000121669 448 ntBASIC16.2■□□□□ 0.18
Vti1aO89116 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC16.2■□□□□ 0.18
Vti1aO89116 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.2■□□□□ 0.18
Vti1aO89116 Gm42901-201ENSMUST00000197735 3171 ntBASIC16.2■□□□□ 0.18
Vti1aO89116 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Ppp1r15b-201ENSMUST00000052529 5594 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Vti1aO89116 Prkcz2-201ENSMUST00000206136 1756 ntBASIC16.2■□□□□ 0.18
Vti1aO89116 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Vti1aO89116 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Vti1aO89116 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Pld4-201ENSMUST00000063888 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Gm14722-201ENSMUST00000118943 689 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Rprl2-201ENSMUST00000157150 290 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 AA543401-201ENSMUST00000164248 1269 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC16.19■□□□□ 0.18
Vti1aO89116 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.19■□□□□ 0.18
Vti1aO89116 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC16.19■□□□□ 0.18
Vti1aO89116 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC16.19■□□□□ 0.18
Vti1aO89116 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Vti1aO89116 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Vti1aO89116 AC119177.1-201ENSMUST00000227647 1332 ntBASIC16.19■□□□□ 0.18
Vti1aO89116 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC16.18■□□□□ 0.18
Vti1aO89116 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
Vti1aO89116 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC16.18■□□□□ 0.18
Vti1aO89116 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
Vti1aO89116 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Vti1aO89116 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Gadd45gip1-201ENSMUST00000036734 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 BC028777-201ENSMUST00000137883 985 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Gm45612-201ENSMUST00000211320 160 ntBASIC16.18■□□□□ 0.18
Vti1aO89116 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Pitpnm2-209ENSMUST00000161938 5866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Vti1aO89116 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms