Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Gpd2-202ENSMUST00000112618 5759 ntTSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC13.65□□□□□ -0.22
Lmx1bO88609 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Lmx1bO88609 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Tmem237-201ENSMUST00000087475 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.64□□□□□ -0.23
Lmx1bO88609 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.64□□□□□ -0.23
Lmx1bO88609 AC124549.3-201ENSMUST00000225541 367 ntBASIC13.64□□□□□ -0.23
Lmx1bO88609 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Eif2b1-201ENSMUST00000031334 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 AL691505.1-201ENSMUST00000219965 1618 ntTSL 5 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Cr1l-208ENSMUST00000194111 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Lmx1bO88609 Mtg2-201ENSMUST00000087563 1346 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Lmx1bO88609 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Tmpo-201ENSMUST00000020123 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Lmx1bO88609 AC155252.2-201ENSMUST00000226946 680 ntBASIC13.63□□□□□ -0.23
Lmx1bO88609 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Gtpbp10-201ENSMUST00000088842 941 ntTSL 5 BASIC13.63□□□□□ -0.23
Lmx1bO88609 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Fam102a-201ENSMUST00000048375 4223 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Lmx1bO88609 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Lmx1bO88609 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Lmx1bO88609 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC13.62□□□□□ -0.23
Lmx1bO88609 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Gm14722-201ENSMUST00000118943 689 ntBASIC13.62□□□□□ -0.23
Lmx1bO88609 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Tfap2a-203ENSMUST00000223869 2037 ntBASIC13.62□□□□□ -0.23
Lmx1bO88609 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Lmx1bO88609 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC13.62□□□□□ -0.23
Lmx1bO88609 Bmp8b-201ENSMUST00000002457 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Lmx1bO88609 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 AC157650.3-201ENSMUST00000225058 1476 ntBASIC13.61□□□□□ -0.23
Lmx1bO88609 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Lmx1bO88609 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms