Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Magi1-208ENSMUST00000204347 7929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Mir5126-201ENSMUST00000175513 77 ntBASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 AC157650.3-201ENSMUST00000225058 1476 ntBASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Prpf40aQ9R1C7 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Prpf40aQ9R1C7 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Prpf40aQ9R1C7 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
Prpf40aQ9R1C7 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Prpf40aQ9R1C7 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Prpf40aQ9R1C7 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Gm8318-201ENSMUST00000182954 872 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Gm7556-201ENSMUST00000201178 1084 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Prpf40aQ9R1C7 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Arhgef9-217ENSMUST00000197364 1796 ntTSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Gm6184-201ENSMUST00000120403 1261 ntBASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Gm12350-201ENSMUST00000121208 462 ntBASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Gm5253-201ENSMUST00000187104 1025 ntBASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 AC133598.3-202ENSMUST00000224219 531 ntBASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Nacc2-201ENSMUST00000028300 6378 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Tnfrsf11a-201ENSMUST00000027559 5027 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Prpf40aQ9R1C7 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Gbp5-201ENSMUST00000090127 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Gm13036-201ENSMUST00000117799 748 ntBASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Prpf40aQ9R1C7 Gm9682-201ENSMUST00000197505 556 ntBASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms