Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 1700016P03Rik-201ENSMUST00000134252 863 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm27631-201ENSMUST00000184163 466 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 AC090659.2-201ENSMUST00000225378 1186 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Mansc4-202ENSMUST00000123367 542 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm18062-201ENSMUST00000208020 547 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 Gm18055-201ENSMUST00000208254 547 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 AC153962.4-201ENSMUST00000217878 242 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 AC156016.3-201ENSMUST00000228623 344 ntBASIC17.66■□□□□ 0.42
Scn11aQ9R053 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Scn11aQ9R053 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Gm12138-201ENSMUST00000122180 951 ntBASIC17.65■□□□□ 0.42
Scn11aQ9R053 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Mroh1-217ENSMUST00000162319 1244 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 AC124732.1-201ENSMUST00000221551 910 ntBASIC17.65■□□□□ 0.42
Scn11aQ9R053 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Syt7-205ENSMUST00000224135 1557 ntBASIC17.65■□□□□ 0.42
Scn11aQ9R053 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC17.65■□□□□ 0.42
Scn11aQ9R053 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Scn11aQ9R053 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Cyp21a2-ps-201ENSMUST00000172970 1383 ntBASIC17.64■□□□□ 0.42
Scn11aQ9R053 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Scn11aQ9R053 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Gm42901-201ENSMUST00000197735 3171 ntBASIC17.64■□□□□ 0.41
Scn11aQ9R053 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Scn11aQ9R053 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Gm6944-201ENSMUST00000182449 1006 ntBASIC17.64■□□□□ 0.41
Scn11aQ9R053 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Shd-206ENSMUST00000225145 998 ntBASIC17.64■□□□□ 0.41
Scn11aQ9R053 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Scn11aQ9R053 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Gm43630-201ENSMUST00000201550 776 ntBASIC17.63■□□□□ 0.41
Scn11aQ9R053 Gm16476-201ENSMUST00000221544 139 ntBASIC17.63■□□□□ 0.41
Scn11aQ9R053 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Scn11aQ9R053 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms