Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Cpsf1Q9EPU4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf1Q9EPU4 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm6415-201ENSMUST00000118488 348 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm29310-201ENSMUST00000185468 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21825-201ENSMUST00000185728 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm29109-201ENSMUST00000185895 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21896-201ENSMUST00000186520 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21873-201ENSMUST00000186728 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21794-201ENSMUST00000187056 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21880-201ENSMUST00000187275 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21826-201ENSMUST00000187451 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21198-201ENSMUST00000188393 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21749-201ENSMUST00000189343 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21901-201ENSMUST00000189568 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm29424-201ENSMUST00000189716 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm28599-201ENSMUST00000189838 694 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21867-201ENSMUST00000189917 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm29269-201ENSMUST00000190087 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21722-201ENSMUST00000190153 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm28423-201ENSMUST00000190701 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21899-201ENSMUST00000190745 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21910-201ENSMUST00000191163 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21849-201ENSMUST00000191571 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm28678-201ENSMUST00000191593 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm20910-201ENSMUST00000193268 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Gm21871-201ENSMUST00000194621 696 ntBASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cpsf1Q9EPU4 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Gm5357-201ENSMUST00000212720 1924 ntBASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Kctd20-208ENSMUST00000168507 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC20.61■□□□□ 0.89
Cpsf1Q9EPU4 Arf3-201ENSMUST00000053183 3579 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Gm10584-201ENSMUST00000207036 2628 ntBASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Gm6756-201ENSMUST00000180647 1620 ntBASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cpsf1Q9EPU4 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Ttll5-204ENSMUST00000110220 2655 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cpsf1Q9EPU4 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 41.5 ms