Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Parp6-201ENSMUST00000026267 2709 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cdc40Q9DC48 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Stk11-202ENSMUST00000105370 1474 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Ndufa5-202ENSMUST00000118558 315 ntTSL 2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm15358-201ENSMUST00000119249 520 ntBASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 AC160980.1-201ENSMUST00000224136 970 ntBASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Slc5a5-201ENSMUST00000000809 2928 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Eml3-202ENSMUST00000224272 2978 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
Cdc40Q9DC48 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Nrros-201ENSMUST00000099991 2548 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Zfp879-203ENSMUST00000109134 2414 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Zfp879-201ENSMUST00000049625 2408 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm4995-201ENSMUST00000117247 432 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm11185-201ENSMUST00000117732 1007 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm11764-201ENSMUST00000120221 623 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Mir3113-201ENSMUST00000175478 76 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Gm7787-201ENSMUST00000216858 688 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 AC131709.1-201ENSMUST00000224731 1180 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Bloc1s5-203ENSMUST00000224902 612 ntBASIC14□□□□□ -0.17
Cdc40Q9DC48 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdc40Q9DC48 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC14□□□□□ -0.17
Cdc40Q9DC48 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms