Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Gm6736-201ENSMUST00000166583 948 ntBASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Pank3-201ENSMUST00000018990 7376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Nup88Q8CEC0 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm4609-201ENSMUST00000106443 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm5138-201ENSMUST00000113842 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm15191-201ENSMUST00000117933 1000 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm12182-201ENSMUST00000118655 1008 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm13882-201ENSMUST00000120886 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm10284-201ENSMUST00000145057 1005 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm10481-201ENSMUST00000179228 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm2574-201ENSMUST00000181051 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm3200-201ENSMUST00000181493 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm8825-201ENSMUST00000182565 998 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm4518-201ENSMUST00000182638 718 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm8330-201ENSMUST00000182754 1008 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm4575-201ENSMUST00000182991 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm8709-201ENSMUST00000183230 1012 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm27646-201ENSMUST00000183989 110 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm10293-201ENSMUST00000076317 1002 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gm6316-201ENSMUST00000082064 1020 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 AC122901.1-201ENSMUST00000214203 1790 ntBASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Nup88Q8CEC0 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Cdkl3-201ENSMUST00000063303 2765 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Gm4995-201ENSMUST00000117247 432 ntBASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Gm43575-201ENSMUST00000196420 516 ntBASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Stum-205ENSMUST00000211561 1063 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Gm13337-201ENSMUST00000119183 1594 ntBASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Nup88Q8CEC0 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Nup88Q8CEC0 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Sez6-202ENSMUST00000093995 4239 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Nup88Q8CEC0 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms