Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Safb-201ENSMUST00000095224 3106 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Rhpn1-201ENSMUST00000023244 1932 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp40Q8BWR4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Jph4-201ENSMUST00000022819 4489 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Gm42466-201ENSMUST00000202099 1301 ntBASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Tcf21-202ENSMUST00000218002 1788 ntBASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Gm17837-201ENSMUST00000186435 985 ntBASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp40Q8BWR4 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Gm6888-201ENSMUST00000221983 706 ntBASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Mxra8os-201ENSMUST00000097740 687 ntBASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp40Q8BWR4 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Gm8410-201ENSMUST00000117225 605 ntBASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Gm5479-201ENSMUST00000160578 435 ntBASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Gm5626-201ENSMUST00000222151 1058 ntBASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Usp40Q8BWR4 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Gm44616-201ENSMUST00000206417 1732 ntBASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Usp40Q8BWR4 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Gm10313-201ENSMUST00000095320 1002 ntBASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
Usp40Q8BWR4 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Usp40Q8BWR4 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms