Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC12.25□□□□□ -0.45
Col7a1Q63870 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.25□□□□□ -0.45
Col7a1Q63870 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Col7a1Q63870 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Gm5479-201ENSMUST00000160578 435 ntBASIC12.25□□□□□ -0.45
Col7a1Q63870 Mir6979-201ENSMUST00000183927 56 ntBASIC12.25□□□□□ -0.45
Col7a1Q63870 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC12.25□□□□□ -0.45
Col7a1Q63870 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Col7a1Q63870 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC12.25□□□□□ -0.45
Col7a1Q63870 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC12.25□□□□□ -0.45
Col7a1Q63870 Lrrc42-201ENSMUST00000030360 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Col7a1Q63870 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Folr1-205ENSMUST00000106986 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Igf1-206ENSMUST00000122100 651 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Gm33320-201ENSMUST00000192232 530 ntBASIC12.24□□□□□ -0.45
Col7a1Q63870 Gm18916-201ENSMUST00000198264 1246 ntBASIC12.24□□□□□ -0.45
Col7a1Q63870 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Gatm-201ENSMUST00000028624 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Gm38327-201ENSMUST00000195852 1755 ntBASIC12.24□□□□□ -0.45
Col7a1Q63870 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC12.24□□□□□ -0.45
Col7a1Q63870 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.24□□□□□ -0.45
Col7a1Q63870 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Col7a1Q63870 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.23□□□□□ -0.45
Col7a1Q63870 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC12.23□□□□□ -0.45
Col7a1Q63870 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC12.23□□□□□ -0.45
Col7a1Q63870 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Col7a1Q63870 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC12.23□□□□□ -0.45
Col7a1Q63870 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Col7a1Q63870 BC001981-202ENSMUST00000191393 1545 ntBASIC12.23□□□□□ -0.45
Col7a1Q63870 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Col7a1Q63870 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Gm8805-201ENSMUST00000117848 313 ntBASIC12.23□□□□□ -0.45
Col7a1Q63870 Gm10156-201ENSMUST00000122364 462 ntBASIC12.23□□□□□ -0.45
Col7a1Q63870 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Myc-202ENSMUST00000159327 2186 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col7a1Q63870 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Col7a1Q63870 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Gm15593-201ENSMUST00000122085 1008 ntBASIC12.22□□□□□ -0.45
Col7a1Q63870 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.22□□□□□ -0.45
Col7a1Q63870 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Gm8598-201ENSMUST00000221184 836 ntBASIC12.22□□□□□ -0.45
Col7a1Q63870 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Olfr171-201ENSMUST00000079891 945 ntAPPRIS P2 BASIC12.22□□□□□ -0.45
Col7a1Q63870 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC12.22□□□□□ -0.45
Col7a1Q63870 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC12.22□□□□□ -0.45
Col7a1Q63870 Ighv1-62-201ENSMUST00000193406 350 ntBASIC12.22□□□□□ -0.45
Col7a1Q63870 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Gm18556-201ENSMUST00000219748 1031 ntBASIC12.22□□□□□ -0.45
Col7a1Q63870 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col7a1Q63870 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms