Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Gm13453-201ENSMUST00000118708 357 ntBASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Fam172a-203ENSMUST00000163257 1436 ntAPPRIS P4 TSL 5 BASIC26.04■■□□□ 1.76
Trim41Q5NCC3 AC124751.1-201ENSMUST00000222716 1408 ntBASIC26.04■■□□□ 1.76
Trim41Q5NCC3 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Gm15487-201ENSMUST00000122373 465 ntBASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Gm6888-201ENSMUST00000221983 706 ntBASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim41Q5NCC3 Gm14719-201ENSMUST00000121891 340 ntBASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Rbfox2-208ENSMUST00000227930 1218 ntBASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Syt7-204ENSMUST00000223586 1344 ntBASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 AC131743.5-201ENSMUST00000220775 1618 ntBASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Gm14026-201ENSMUST00000120625 1789 ntBASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim41Q5NCC3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.76
Trim41Q5NCC3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
Trim41Q5NCC3 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC26.01■■□□□ 1.75
Trim41Q5NCC3 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Fntb-206ENSMUST00000137826 1442 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Gm9824-201ENSMUST00000178707 561 ntBASIC26■■□□□ 1.75
Trim41Q5NCC3 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Mccc2-201ENSMUST00000022148 2123 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Trim41Q5NCC3 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
Trim41Q5NCC3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 AC069562.2-201ENSMUST00000224644 2146 ntBASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Celf4-206ENSMUST00000224553 1729 ntBASIC25.99■■□□□ 1.75
Trim41Q5NCC3 Pias3-201ENSMUST00000064900 2931 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Gm6415-201ENSMUST00000118488 348 ntBASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Gm27920-201ENSMUST00000183953 96 ntBASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Gm7619-201ENSMUST00000210649 1282 ntBASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Gm9257-201ENSMUST00000221254 232 ntBASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trim41Q5NCC3 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms