Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Usp28Q5I043 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Cd82-202ENSMUST00000099696 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
Usp28Q5I043 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.13■□□□□ 0.33
Usp28Q5I043 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm25990-201ENSMUST00000102440 86 ntBASIC17.13■□□□□ 0.33
Usp28Q5I043 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm7977-201ENSMUST00000193787 748 ntBASIC17.13■□□□□ 0.33
Usp28Q5I043 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm6089-201ENSMUST00000197666 938 ntBASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm43767-201ENSMUST00000198933 381 ntBASIC17.13■□□□□ 0.33
Usp28Q5I043 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC17.13■□□□□ 0.33
Usp28Q5I043 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.13■□□□□ 0.33
Usp28Q5I043 Slc6a8-203ENSMUST00000114465 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Usp28Q5I043 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Pard6b-201ENSMUST00000052125 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Pth2r-201ENSMUST00000027083 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Dnm1-217ENSMUST00000202578 2820 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Gm37912-201ENSMUST00000191895 3076 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 Gm18489-201ENSMUST00000172565 551 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.12■□□□□ 0.33
Usp28Q5I043 AC164567.1-201ENSMUST00000219185 960 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 AC147366.1-201ENSMUST00000227671 852 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Usp28Q5I043 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Usp28Q5I043 AC162938.1-201ENSMUST00000213140 2323 ntBASIC17.12■□□□□ 0.33
Usp28Q5I043 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm45760-201ENSMUST00000212190 1782 ntBASIC17.11■□□□□ 0.33
Usp28Q5I043 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm23547-201ENSMUST00000158210 271 ntBASIC17.11■□□□□ 0.33
Usp28Q5I043 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Mxra8os-201ENSMUST00000097740 687 ntBASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Usp28Q5I043 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Gm3928-201ENSMUST00000121141 1307 ntBASIC17.11■□□□□ 0.33
Usp28Q5I043 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Cbs-201ENSMUST00000067801 2497 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Usp28Q5I043 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms