Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Adam23-201ENSMUST00000087374 6426 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.73■□□□□ 0.43
Limch1Q3UH68 AC154621.1-201ENSMUST00000226155 1119 ntBASIC17.73■□□□□ 0.43
Limch1Q3UH68 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Strn4-201ENSMUST00000019220 3535 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Limch1Q3UH68 Gm8242-201ENSMUST00000193029 1420 ntBASIC17.72■□□□□ 0.43
Limch1Q3UH68 Gm45293-201ENSMUST00000209754 1812 ntBASIC17.72■□□□□ 0.43
Limch1Q3UH68 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Tbc1d20-201ENSMUST00000028963 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Gm7901-201ENSMUST00000120430 1597 ntBASIC17.72■□□□□ 0.43
Limch1Q3UH68 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC17.72■□□□□ 0.43
Limch1Q3UH68 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Limch1Q3UH68 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Zfp36l2-201ENSMUST00000060366 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.71■□□□□ 0.43
Limch1Q3UH68 Mir3113-201ENSMUST00000175478 76 ntBASIC17.71■□□□□ 0.43
Limch1Q3UH68 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Mir8117-201ENSMUST00000184773 107 ntBASIC17.71■□□□□ 0.43
Limch1Q3UH68 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.71■□□□□ 0.43
Limch1Q3UH68 Csrnp1-203ENSMUST00000214058 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Limch1Q3UH68 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.42
Limch1Q3UH68 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Limch1Q3UH68 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC17.71■□□□□ 0.42
Limch1Q3UH68 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm5682-201ENSMUST00000173402 505 ntBASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms