Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Pfdn6-205ENSMUST00000174426 396 ntTSL 2 BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Ddb1Q3U1J4 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 Ntrk2-205ENSMUST00000224402 2284 ntBASIC19.02■□□□□ 0.63
Ddb1Q3U1J4 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Hpcal4-202ENSMUST00000106246 1627 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 AC155286.1-201ENSMUST00000218632 448 ntBASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Ddb1Q3U1J4 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Aph1a-202ENSMUST00000056710 1601 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Gm15635-204ENSMUST00000208024 2539 ntBASIC19■□□□□ 0.63
Ddb1Q3U1J4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC19■□□□□ 0.63
Ddb1Q3U1J4 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Abhd18-205ENSMUST00000203472 588 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Gm45453-201ENSMUST00000211758 853 ntBASIC19■□□□□ 0.63
Ddb1Q3U1J4 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Rassf8-202ENSMUST00000058538 1131 ntBASIC19■□□□□ 0.63
Ddb1Q3U1J4 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Ddb1Q3U1J4 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Ewsr1-202ENSMUST00000073308 2269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Gm45098-201ENSMUST00000207179 657 ntBASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Upk1a-201ENSMUST00000006476 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Ddb1Q3U1J4 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Ddb1Q3U1J4 Gm12960-201ENSMUST00000120017 1066 ntBASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms